More genes turned on when plants compete

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Some people travel to northern California for

wine. However, Maren Friesen, Michigan State University plant

biologist, treks to the Golden State for clover.

The lessons of plant diversity and competition learned from a clover patch, which are featured in a special issue of the Journal of Ecology, can potentially unlock secrets on plant interactions around the globe.

"There's something quite special in how clover assemble such diverse

communities. They compete, yet they have many traits in common due to

shared ancestry," Friesen said. "Native Californian Trifolium represents

a special system for understanding competitive interactions among close

relatives. We'd like to understand their processes of diversity before

they're all gone."

These special patches of clover are located on a handful of hills in

Northern California. Friesen's patch was in the Bodega Marine Lab

reserve, run by the University of California, Davis, which harbors a

diverse community of clovers.

Friesen has been working with Sharon Strauss at UC Davis since 2014

to unlock the secret to their sociability. Friesen admits that the

experiment began as a bit of a genome-wide "fishing trip." The team,

whose lead author was Alan Bowsher, MSU postdoctoral researcher,

collected samples from Trifolium fucatum growing with different competitors and sifted through thousands of genes -- 26,000 of them, to be precise.

The trip, though, yielded a trophy catch. A single gene, UDP-glucose

flavonoid 3-O-glucosyltransferase, made the expedition worthwhile. And

just like all trophy fish, the catch was documented with a photo --

actually a graph.

"It's a very intriguing 'fish,' part of a very important signaling

pathway," Friesen said. "It's also a flavonoid, which is involved in

many plant interactions, including those involved with nitrogen fixing

bacteria. The gene's levels rise when the plants compete with other

species of plants and decrease when surrounded by members of the same


It plays a key role in the relationship plants form with bacteria

that fix nitrogen, grabbing the critical element from the air and soil

and accumulating it in root nodules -- essentially, fertilizing

themselves. If scientists could identify the genes and mechanisms

involved in this process, they could potentially find ways to reduce the

amounts of manmade fertilizer used to grow crops.

"Past studies have focused on individual plants, but few have focused

on plant competition and studying the entirety of all the genes being

expressed, the transcriptomic response, during these interactions,"

Friesen said. "Yet scientists and farmers are aware of these

interactions; that's reflected in knowing that it's beneficial to rotate

crops, in determining the distance between rows of plants and the

proximity of growing crops near other plants."

This, however, was one of the first studies to tackle the

transcriptomic response during specific plant interactions. It's akin to

listening to plants, but doing so on the genetic level. The team

listened and noted the pathways being used, observed plants' body

language in terms to how they reacted with their friends versus with


Another novel result involved the correlation of the genes. What made

the "big fish" gene standout so prominently is that all of the other

genes responding to different types of competitors stayed grouped

together. The team initially thought the genes would be scattered

everywhere. Basically, though, they reacted the same way.

"In a sense, we saw this gene respond differently to the neighbor's

identity: increased expression during competition with a different

species and lower expression when among the same species," Friesen said.

"Competition is operating in a comparable way. The increased expression

also correlated with increased growth, although it's much too early to

begin to find out why."

An additional finding involved two competing plants. Each has a

preferred level of iron in the soil in which they live. However, one

plant turned on its iron transport genes solely because it sensed its

competitor was nearby.

"It's like it's saying, 'If you're here, you must be in better soil,

and I must be in a low-iron area,'" Friesen said. "There must be

something cool over there."

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